correctedCellVolumeWeightMethod.C

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/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     |
    \\  /    A nd           | www.openfoam.com
     \\/     M anipulation  |
-------------------------------------------------------------------------------
    Copyright (C) 2015 OpenFOAM Foundation
    Copyright (C) 2015 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
\*---------------------------------------------------------------------------*/
 
#include "correctedCellVolumeWeightMethod.H"
#include "addToRunTimeSelectionTable.H"
 
// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
namespace Foam
{
    defineTypeNameAndDebug(correctedCellVolumeWeightMethod, 0);
    addToRunTimeSelectionTable
    (
        meshToMeshMethod,
        correctedCellVolumeWeightMethod,
        components
    );
}
 
// * * * * * * * * * * * * Protected Member Functions  * * * * * * * * * * * //
 
void Foam::correctedCellVolumeWeightMethod::calculateAddressing
(
    labelListList& srcToTgtCellAddr,
    scalarListList& srcToTgtCellWght,
    pointListList& srcToTgtCellVec,
    labelListList& tgtToSrcCellAddr,
    scalarListList& tgtToSrcCellWght,
    pointListList& tgtToSrcCellVec,
    const label srcSeedI,
    const label tgtSeedI,
    const labelList& srcCellIDs,
    boolList& mapFlag,
    label& startSeedI
)
{
    label srcCellI = srcSeedI;
    label tgtCellI = tgtSeedI;
 
    List<DynamicList<label>> srcToTgtAddr(src_.nCells());
    List<DynamicList<scalar>> srcToTgtWght(src_.nCells());
    List<DynamicList<point>> srcToTgtVec(src_.nCells());
 
    List<DynamicList<label>> tgtToSrcAddr(tgt_.nCells());
    List<DynamicList<scalar>> tgtToSrcWght(tgt_.nCells());
    List<DynamicList<point>> tgtToSrcVec(tgt_.nCells());
 
    // List of tgt cell neighbour cells
    DynamicList<label> queuedCells(10);
 
    // List of tgt cells currently visited for srcCellI to avoid multiple hits
    DynamicList<label> visitedCells(10);
 
    // List to keep track of tgt cells used to seed src cells
    labelList seedCells(src_.nCells(), -1);
    seedCells[srcCellI] = tgtCellI;
 
    const scalarField& srcVol = src_.cellVolumes();
    const pointField& srcCc = src_.cellCentres();
    const pointField& tgtCc = tgt_.cellCentres();
 
    do
    {
        queuedCells.clear();
        visitedCells.clear();
 
        // Initial target cell and neighbours
        queuedCells.push_back(tgtCellI);
        appendNbrCells(tgtCellI, tgt_, visitedCells, queuedCells);
 
        while (!queuedCells.empty())
        {
            // Process new target cell as LIFO
            tgtCellI = queuedCells.back();
            queuedCells.pop_back();
            visitedCells.push_back(tgtCellI);
 
            Tuple2<scalar, point> vol = interVolAndCentroid
            (
                srcCellI,
                tgtCellI
            );
 
            // accumulate addressing and weights for valid intersection
            if (vol.first()/srcVol[srcCellI] > tolerance_)
            {
                // store src/tgt cell pair
                srcToTgtAddr[srcCellI].append(tgtCellI);
                srcToTgtWght[srcCellI].append(vol.first());
                srcToTgtVec[srcCellI].append(vol.second()-tgtCc[tgtCellI]);
 
                tgtToSrcAddr[tgtCellI].append(srcCellI);
                tgtToSrcWght[tgtCellI].append(vol.first());
                tgtToSrcVec[tgtCellI].append(vol.second()-srcCc[srcCellI]);
 
                appendNbrCells(tgtCellI, tgt_, visitedCells, queuedCells);
 
                // accumulate intersection volume
                V_ += vol.first();
            }
        }
 
        mapFlag[srcCellI] = false;
 
        // find new source seed cell
        setNextCells
        (
            startSeedI,
            srcCellI,
            tgtCellI,
            srcCellIDs,
            mapFlag,
            visitedCells,
            seedCells
        );
    }
    while (srcCellI != -1);
 
    // transfer addressing into persistent storage
    forAll(srcToTgtCellAddr, i)
    {
        srcToTgtCellAddr[i].transfer(srcToTgtAddr[i]);
        srcToTgtCellWght[i].transfer(srcToTgtWght[i]);
        srcToTgtCellVec[i].transfer(srcToTgtVec[i]);
    }
 
    forAll(tgtToSrcCellAddr, i)
    {
        tgtToSrcCellAddr[i].transfer(tgtToSrcAddr[i]);
        tgtToSrcCellWght[i].transfer(tgtToSrcWght[i]);
        tgtToSrcCellVec[i].transfer(tgtToSrcVec[i]);
    }
 
 
    if (debug%2)
    {
        // At this point the overlaps are still in volume so we could
        // get out the relative error
        forAll(srcToTgtCellAddr, cellI)
        {
            scalar srcVol = src_.cellVolumes()[cellI];
            scalar tgtVol = sum(srcToTgtCellWght[cellI]);
 
            if (mag(srcVol) > ROOTVSMALL && mag((tgtVol-srcVol)/srcVol) > 1e-6)
            {
                WarningInFunction
                    << "At cell " << cellI << " cc:"
                    << src_.cellCentres()[cellI]
                    << " vol:" << srcVol
                    << " total overlap volume:" << tgtVol
                    << endl;
            }
        }
 
        forAll(tgtToSrcCellAddr, cellI)
        {
            scalar tgtVol = tgt_.cellVolumes()[cellI];
            scalar srcVol = sum(tgtToSrcCellWght[cellI]);
 
            if (mag(tgtVol) > ROOTVSMALL && mag((srcVol-tgtVol)/tgtVol) > 1e-6)
            {
                WarningInFunction
                    << "At cell " << cellI << " cc:"
                    << tgt_.cellCentres()[cellI]
                    << " vol:" << tgtVol
                    << " total overlap volume:" << srcVol
                    << endl;
            }
        }
    }
}
 
 
// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
Foam::correctedCellVolumeWeightMethod::correctedCellVolumeWeightMethod
(
    const polyMesh& src,
    const polyMesh& tgt
)
:
    cellVolumeWeightMethod(src, tgt)
{}
 
 
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
 
Foam::correctedCellVolumeWeightMethod::~correctedCellVolumeWeightMethod()
{}
 
 
// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
void Foam::correctedCellVolumeWeightMethod::calculate
(
    labelListList&  srcToTgtAddr,
    scalarListList& srcToTgtWght,
    pointListList&  srcToTgtVec,
 
    labelListList&  tgtToSrcAddr,
    scalarListList& tgtToSrcWght,
    pointListList&  tgtToSrcVec
)
{
    bool ok = initialise
    (
        srcToTgtAddr,
        srcToTgtWght,
        tgtToSrcAddr,
        tgtToSrcWght
    );
 
    if (!ok)
    {
        return;
    }
 
    srcToTgtVec.setSize(srcToTgtAddr.size());
    tgtToSrcVec.setSize(tgtToSrcAddr.size());
 
 
    // (potentially) participating source mesh cells
    const labelList srcCellIDs(maskCells());
 
    // list to keep track of whether src cell can be mapped
    boolList mapFlag(src_.nCells(), false);
    boolUIndList(mapFlag, srcCellIDs) = true;
 
    // find initial point in tgt mesh
    label srcSeedI = -1;
    label tgtSeedI = -1;
    label startSeedI = 0;
 
    bool startWalk =
        findInitialSeeds
        (
            srcCellIDs,
            mapFlag,
            startSeedI,
            srcSeedI,
            tgtSeedI
        );
 
    if (startWalk)
    {
        calculateAddressing
        (
            srcToTgtAddr,
            srcToTgtWght,
            srcToTgtVec,
            tgtToSrcAddr,
            tgtToSrcWght,
            tgtToSrcVec,
            srcSeedI,
            tgtSeedI,
            srcCellIDs,
            mapFlag,
            startSeedI
        );
    }
    else
    {
        // if meshes are collocated, after inflating the source mesh bounding
        // box tgt mesh cells may be transferred, but may still not overlap
        // with the source mesh
        return;
    }
}
 
 
// ************************************************************************* //